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University of Sydney
Scoping study for fish health-mariculture and rabbitfish aquaculture development in Indonesia
Project Leader
Professor Richard Whittington
richardw@camden.usyd.edu.au
Fax
02 9351 1618
Phone
02 9351 1619
Project Country
Project ID:
FIS/2011/038
Start Date
01/12/2011
Reference Number
SB-200410-56542
Project Type
Other
Project Status
Active
Finish Date
31/10/2012
Commissioned Organisation:
University of Sydney, Australia
Commissioned Organisation
University of Sydney, Faculty of Veterinary Science, Australia
Overview Collaborators
- Agency for Marine and Fisheries Research, Indonesia
- Sam Ratulangi University, Indonesia
ACIAR Research Program Manager
Dr Chris Barlow
Program Areas
Project Budget
$67,964.00
Grant Report Value
$74760.00
Grant Report Recipient
University of Sydney
Grant Report Recipient Post Code
2570
Grant Report Finish Date
31/10/2012
Grant Report Start Date
31/10/2011
Improving the sustainability of cocoa production in eastern Indonesia through integrated pest, disease and soil management in an effective extension and policy environment
Project Leader
Dr Phil Keane
p.keane@latrobe.edu.au
Fax
03 94791188
Phone
03 94792219
Project Country
Project Coordinator Phone
(02) 6217 0553
Project ID:
HORT/2010/011
Start Date
01/04/2011
Project Coordinator Fax
(02) 6217 0501
Reference Number
TA-201502-51951
Project Type
Bilateral
Project Status
Active
Finish Date
31/03/2015
Commissioned Organisation:
La Trobe University, Australia
Project Coordinator Email
baxter@aciar.gov.au
Commissioned Organisation
La Trobe University, Department of Botany, Australia
Overview Collaborators
- University of Sydney, Australia
- Mars Asia Pacific, Australia
- University of Hassanudin, Indonesia
- Biotechnology Research Institute for Estate Crops, Indonesia
- Assessment Institute for Agricultural Technology, South Sulawesi, Indonesia
- Indonesian Coffee and Cocoa Research Institute, Indonesia
- University of Papua, Indonesia
- Provincial Agricultural Services (Estates), Indonesia
- Assessment Institute for Agricultural Technology, Papua, Indonesia
- PT Mars Symbioscience Indonesia, Indonesia
ACIAR Research Program Manager
Mr Les Baxter
Program Areas
Overview Objectives
Since the 1980s, smallholder cocoa production in Sulawesi has expanded rapidly. Now the third largest producers of cocoa in the world, over 500,000 smallholders in Sulawesi and outer regions are dependent on the export for their livelihoods. The sustainability of this sector, however, has become threatened as land has become scarce, soil fertility has declined, and pest and disease problems have built up to destructive levels, reducing the yield, quality and profitability of cocoa. The Indonesian government, through the National Cocoa Rehabilitation Program (GERNAS), is seeking technical, extension and policy interventions to ensure the long-term sustainability of existing cocoa production in eastern Indonesia.
Previous ACIAR cocoa projects in Indonesia have lead to the development and widespread adoption of improved cocoa clones, grafting methods and integrated pest and disease management. AGB/2010/011 will build on these projects to address areas requiring further research, including improved soil fertilisation practices, the dissemination of cocoa cloning and improved farm management techniques, with research conducted at one location in Sulawesi, and one in West Papua. AGB/2010/011 aims to support the implementation of GERNAS by providing the research and extension needed for the production of high quality cocoa in sustainable smallholder systems. Achievements of these objectives will break the boom and bust cycle which has characterised cocoa farming globally, and will lead to a more secure future for cocoa famers and their communities.
Project Budget
$2,075,345.00
Grant Report Value
$2282880.00
Grant Report Recipient
La Trobe University
Grant Report Recipient Post Code
3086
Grant Report Finish Date
31/03/2015
Grant Report Start Date
21/02/2011
Potential incentives for sustainable farming for food and water security, and poverty reduction in southern Africa
Project Leader
Professor R. Quentin Grafton
quentin.grafton@anu.edu.au
Fax
+61-2-6125-5570
Phone
+61-2-6125-6558
Inactive project countries
Zimbabwe
Project Coordinator Phone
6217 0561
Project ID:
LWR/2011/015
Start Date
16/06/2011
Reference Number
ML-201603-26670
Project Type
Other
Project Status
Active
Final Progress Report
UZ Final report
The southern African region, like most parts of sub-Saharan Africa, suffers from low and highly variable rainfall events. The fact that the majority of the population in the region relies on rainfed farming systems means that food insecurity is a major challenge in the region.
This scoping study was conducted on the Limpopo Basin in Mozambique, South Africa and Zimbabwe. The findings are summarised as follows:
1. The part of the basin experiences perennial water shortages for cropping. Given that, communities still grow high water demanding crops which means that they experience crop failure almost every season. The threats from climate change and climate variability will further worsen the situation.
2. There are efforts to obtain better your through promotion of soil and water conservation activities throughout the basin. These efforts are promoted by governments, NGOs and individuals.
3. There is scope to increase yields but the levels of adoption are still poor especially where external interventions through NGOs or government programmes are missing.
4. The nature of the rainfall which is characterised by high intensities and low duration implies that storage structures should be promoted more widely.
5. Adoption is influenced by the availability of sufficient and useful information to influence decision and access to resources to invest in new techniques. Both are not readily available to the common farmer in the basin.
6. A wide range of research has been conducted but the research is fragmented and does not build on each other thus duplicating efforts resulting in inefficient use of resources.
7. The effects of climate change will further worsen the food security situation in the region but not much is know about the extent.
8. Involvement of farmers in relevant research will improve uptake. However, their engagement should include all relevant partners i.e. governments, NGOs, stakeholder groups so that it feeds into policy otherwise uptake will remain low.
9. Targeted financial support is needed to kick-start some research activities but should also cover the whole spectrum of water management i.e. water governance, water infrastructure, access and markets.
10. Capacity building is needed at basin management level through training of all levels of water management covering professionals and users.
11. Collaborative research is also needed between regional and international institutions to learn from similar experiences and advances in approaches at different management levels.
AWARD Final report
In this abstract we outline some of the key issues related to the incentivisation of small scale food production and water resources management. These issues are covered in more detail in the body of the document.
Key lessons from research:
1. It is imperative that there is greater integration and co-ordination across government sectors specifically Department of Water Affairs and Dept of Agriculture in respect of water allocation, regulation of use and management for small scale production and poverty alleviation
2. Responses to challenges cannot be decontextualised requiring that a systems view is taken when planning and tackling challenges
3. There is a rudimentary development of the language of sustainability in most sectors
4. Alignment of practices with the legislative framework and policies is essential for transformation to occur
5. Water and food security planning needs to be refocused at the catchment and basin level
Future work:
1. We need to understand how IWRM policies can provide a framework for incentivizing sustainable natural resources management
2. We need to unpack the current incentives or disincentives for sustainable farming.
3. We need to create a vision for sustainable farming at the catchment and basin levels including how to plan water for sustainable agriculture
4. We need to focus on the realignment between the water and land sectors in order to achieve sustainable agriculture to support poverty reduction
Incentives:
We need to understand the landscape of incentives for small scale production and poverty alleviation as it currently exists in the region with the aim to synthesising the expected outcomes and develop practices over the coming 5 years in collaboration with the various departments and relevant farmer groups. We should aim to work collaboratively with farmers and department officials to prepare a supportive environment for sustainable agriculture in the region.
Aus partnerships:
A partnership with Australian research organisations will be valuable in the following regards:
Building a better understanding the livelihoods of the poor in the southern African context and the role of food production within this;
Endeavour to share and exchange experiences and information regarding the development and application of incentives and disincentives for small scale sustainable agriculture in the region
Build body of experience and expertise in respect of small scale agricultural practices, water resources modeling, and international innovation.
CSIR Final report
Finish Date
31/12/2011
Commissioned Organisation:
Australian National University, Australia
Project Coordinator Email
willett@aciar,gov.au
Commissioned Organisation
Australian National University, Centre for Water Economics, Environment and Policy, Australia
Overview Collaborators
- University of Zimbabwe, Zimbabwe
- University of Sydney, Australia
- Association for Water and Rural Development, South Africa
- CSIR, South Africa
ACIAR Research Program Manager
Dr Andrew Noble
Program Areas
Overview Objectives
Food production in southern Africa is constrained by water scarcity, climatic variability, poor soils, the educational needs of emerging farmers and institutional barriers. This Small Research and Development activity (SRA) will investigate the potential of better water use in Mozambique and Zimbabwe, building on existing knowledge and institutions in South Africa. All three countries have sophisticated national water and agricultural policies, and benefit from considerable international aid investment. This scoping activity will assess current practices and promising options for research and implementation involving rainwater harvesting, adaptive, local-scale water resource management, the role of water management in poverty reduction and the contribution of exchange of knowledge between Australia and Africa. Ultimately, it plans to share this knowledge horizontally between the three countries.
Project Budget
$133,968.00
Grant Report Value
$147365.00
Grant Report Recipient
Australian National University
Grant Report Recipient Post Code
0200
Grant Report Finish Date
31/12/2011
Grant Report Start Date
19/05/2011
Overview of smallholder fish livelihoods in Lao PDR
Project Leader
Dr Phil Hirsch
philip.hirsch@sydney.edu.au
Fax
02 9351 8627
Phone
02 9351 3355
Project Country
Project ID:
ASEM/2010/059
Start Date
01/12/2010
Reference Number
JW-202710-41640
Project Type
Other
Project Status
Active
Finish Date
30/11/2011
Commissioned Organisation:
University of Sydney, Australia
Commissioned Organisation
University of Sydney, Department of Geography, Australia
Overview Collaborators
ACIAR Research Program Manager
Dr Caroline Lemerle
Program Areas
Overview Objectives
Fish are an essential part of the Lao diet and are a key source of animal protein. The majority of rural Lao depend on capture fisheries for significant parts of their income and diet, with about 70 per cent of the rural population obtaining fish from locally available water resources. As part of household nutrition and income, however, fisheries are under threat from changes to water flow as a result of infrastructure investments, whose barrier and flood-regime effects will impact on fish ecology. Hydroelectric dams, irrigation, and non-water related infrastructure such as water levees have a barrier effect on water, fish and the vulnerability of villages.
This Small Research Activity (SRA) addresses the current and potentially accelerating livelihood changes faced by rural Lao as a result of infrastructure development. Most assessments to date have been carried out at a project-specific level, or at a very broad level within the Mekong River Basin. There exists a need to study fisheries within different ecological systems to achieve a more nuanced, and livelihood-orientated understanding of the socio-economic implications of fisheries decline at a local level. This approach will help in understanding and quantifying the real costs of change. The primary objective of this SRA is to survey and characterise fisheries in diverse systems across Laos PDR, including those long, recently, or yet to be impacted.
Project Budget
$124,974.00
Grant Report Value
$137471.00
Grant Report Recipient
University of Sydney
Grant Report Recipient Post Code
2006
Grant Report Finish Date
30/11/2011
Grant Report Start Date
09/11/2010
Diversification of smallholder coastal aquaculture in Indonesia
Project Leader
Professor Richard Whittington
richardw@camden.usyd.edu.au
Fax
02 9351 1618
Phone
02 9351 1619
Project Country
Project ID:
FIS/2007/124
Start Date
01/01/2010
Reference Number
BS-201012-50898
Project Type
Bilateral
Project Status
Active
Finish Date
31/12/2013
Commissioned Organisation:
University of Sydney, Australia
Commissioned Organisation
University of Sydney, Faculty of Veterinary Science, Australia
Overview Collaborators
- University of New South Wales, Australia
- Directorate General of Aquaculture, Indonesia
- Brackishwater Aquaculture Development Centre, Takalar, Indonesia
- Brackishwater Aquaculture Development Center, Ujung Batee, Indonesia
- Research Institute for Coastal Aquaculture, Indonesia
- Gadjah Mada University, Indonesia
- Charles Sturt University, Australia
ACIAR Research Program Manager
Dr Chris Barlow
Program Areas
Overview Objectives
Brackishwater pond (tambak) aquaculture in Indonesia is an important livelihood activity in coastal areas, but many small-scale farmers struggle to continue farming shrimp. Viral diseases cause crop losses, and input costs (particularly for feed) are rising while prices for shrimp are declining due to strong competition in a global marketplace. Thus many farms are out of production or producing only limited quantities of shrimp. Recent ACIAR-funded research revealed that while small-scale shrimp farms predominate in South Sulawesi they only contribute about 5% of total provincial shrimp production. While some farms now utilise Better Management Practices (BMPs) for shrimp farming to overcome production constraints, successful implementation depends on meeting specific site-related, socioeconomic and logistical criteria. A large proportion of farms that will fail to meet the criteria required for shrimp BMP implementation will need alternative production strategies if they are to remain (or become) viable.
This project will test and evaluate the economic viability of alternative commodities for brackishwater pond culture such as tilapia, milkfish, grouper, crabs and sea cucumbers. It will involve evaluation trials in South Sulawesi and Nanggroe Aceh Darussalam (Aceh) provinces to build on the outcomes of previous and ongoing ACIAR projects. The work will also encompass mariculture development on offshore islands of Nanggroe Aceh Darussalam province, particularly Pulau Simuelue. Trials on lobster puerulus collection and grow-out will be undertaken with support from another ACIAR project studying spiny lobster aquaculture development in eastern Indonesia, Vietnam and Australia. Additionally, growth trials with grouper will be undertaken in collaboration with the fish seed production centre on Pulau Simuelue to promote the use of more sustainable culture practices developed in other ACIAR-supported work.
Project Budget
$1,935,526.00
Grant Report Value
$2129079.00
Grant Report Recipient
University of Sydney
Grant Report Recipient Post Code
2570
Grant Report Finish Date
31/12/2013
Grant Report Start Date
16/12/2009
Determinants for White Spot Disease outbreaks in Indonesian smallholder shrimp ponds - a pilot study of locality factors, White Spot Syndrome Virus genotype distributions and pond factors
Project Leader
Professor Richard Whittington
richardw@camden.usyd.edu.au
Fax
02 9351 1618
Phone
02 9351 1619
Project Country
Project Coordinator Phone
(02) 9527 8462
0419 697862
Project ID:
FIS/2009/035
Start Date
01/06/2009
Project Coordinator Fax
(02) 9523 5966
Reference Number
LJ-202905-55050
Project Type
Other
Project Status
Concluded
Finish Date
30/11/2010
Commissioned Organisation:
University of Sydney, Australia
Project Coordinator Email
smith@aciar.gov.au
Commissioned Organisation
University of Sydney, Faculty of Veterinary Science, Australia
Overview Collaborators
- Gadjah Mada University, Indonesia
- CSIRO Livestock Industries, Australia
- Directorate General Aquaculture, Indonesia
ACIAR Research Program Manager
Dr Chris Barlow
Program Areas
Overview Objectives
Research in four earlier ACIAR projects has revealed that successful smallholder shrimp farming at any locality in Indonesia is likely to depend on interactions between several site-specific physical and environmental characteristics: the distribution and load of various white spot syndrome virus (WSSV) genotypes in host populations; the virulence and/or competitive fitness of these genotypes for farmed shrimp; the maintenance of suitable pond environments and biosecurity. This small research activity, which formally brings together for the first time agencies involved in earlier or concurrent ACIAR studies of white spot disease (WSD) and related issues, has the following objectives:
To determine the stability of WSD outbreak-associated WSSV genotypes when passaged through various shrimp - namely WSSV-free Penaeus vannamei, WSSV PCR test-negative P. monodon and selected other WSSV PCR test-negative, non-penaeid hosts;
To identify - using locality-specific environmental data, pond environmental data and data on WSSV genotype distribution and dynamics - the likely determinants for WSD outbreaks at a suitable, broadly representative locality in South Sulawesi.
Taken together with findings from project FIS/2005/169, this study should enable relevant agencies (and ultimately farmers themselves) to more readily identify localities suitable for smallholder shrimp farming, and also to assist in the modification and simplification of these programs that will lift both profitability and adoption rates.
Project Budget
$149,990.00
Grant Report Value
$164989.00
Grant Report Recipient
University of Sydney
Grant Report Recipient Post Code
2570
Grant Report Finish Date
30/11/2010
Grant Report Start Date
17/06/2009
Control of nodaviral disease in tropical marine finfish hatcheries: Enhanced biosecurity through the application of contemporary biotechnology, epidemiology and pathobiology
Project Leader
Professor Richard Whittington
richardw@camden.usyd.edu.au
Fax
02 9351 1618
Phone
02 9351 1619
Project Country
Project Coordinator Phone
(02) 9527 8462
0419 697862
Project ID:
FIS/2005/137
Start Date
01/03/2009
Project Coordinator Fax
(02) 9523 5966
Reference Number
LJ-202811-43120
Project Type
Other
Project Status
Concluded
Final Progress Report
BACKGROUND:
A number of microbial and parasitic diseases causing death, debilitation, poor growth and high economic loss are known to be common to Indonesia and Australia. Pre-eminent among these is the nodaviral disease, viral nervous necrosis (VNN). Despite the regional importance of VNN, the underlying epidemiology and pathogenesis of the disease, i.e., the mechanisms whereby the virus spreads from the environment to hatcheries and farms and the mechanisms which result in infection and disease in the fish are poorly understood.
Fundamental to the development of effective strategies to control or prevent VNN is an understanding of its epidemiology and pathogenesis. Without such knowledge, and without contemporary pathological, virological and molecular diagnostic procedures through which such knowledge can be gained, the ability to develop and implement rational measures to control and prevent VNN is severely compromised.
A validated, sensitive and specific real time PCR assay developed by the University of Sydney for the detection of VNN has been adopted by diagnostic laboratories throughout Australia and is being used as a valuable research tool to better understand the epidemiology and pathogenesis of VNN.
Recognising that both Australia and Indonesia have VNN as a major disease in aquaculture, that little is known regarding the epidemiology or pathogenesis of nodaviral infections and consequently, rational control measures are difficult to implement, a collaborative research project was undertaken between Indonesia and Australia to develop practical on-site strategies for the control of VNN.
OBJECTIVES:
The specific objectives of the project were:
To evaluate current biosecurity measures in select Indonesian marine finfish hatcheries and to evaluate current diagnostic capacity in select Indonesian laboratories as a basis for determining functional and operational improvements in hatchery management and control of VNN.
To enhance the knowledge base of Indonesian laboratory staff in aquatic animal pathology, epidemiology and molecular diagnostics through training workshops at the University of Sydney focussing on the use and limitations of PCR as a diagnostic and research tool to investigate the epidemiology and pathogenesis of VNN.
To establish contemporary PCR technology for the diagnosis of VNN within select Indonesian laboratories through transfer of technology supported by on-going collaboration and quality assurance standards.
EVALUATION OF DIAGNOSTIC CAPACITY (Objective1):
A project scoping study was undertaken in February-March 2009 visiting select Government and University research laboratories and mariculture facilities. The study identified that biosecurity measures in the Indonesian finfish hatcheries inspected were absent or rudimentary, although an awareness of the need for biosecurity was evident at some hatcheries. In most cases the causes of production-limiting diseases had not been determined with any certainty and there was reliance on PCR technology to indicate the presence or absence of two pathogens - VNN and iridovirus. Although PCR diagnostic capacity was present at each laboratory visited, there was reliance on commercial kit-based, PCR tests with little knowledge of the sensitivity or specificity of the assays used, indications of difficulties in interpretation of the results, batch to batch variation between kits and lack of standardisation or quality assurance between laboratories. Further, presence of pathogen (based on PCR alone) was deemed to be evidence of the cause of disease, leading to disease in many species being attributed to VNN and iridovirus across Indonesia without consideration of other aetiologies.
TRAINING AT UNIVERSITY OF SYDNEY (Objective 2):
In September 2009, an intensive training workshop was held at the Faculty of Veterinary Science, University of Sydney to enhance the knowledge base of Indonesian laboratory staff in aquatic animal pathology, epidemiology and molecular diagnostics. Four nominated Indonesian scientists attended the workshop.
The workshop program focussed on the theory and practice of the latest molecular diagnostic techniques and was supported by discussions on the diagnostic process, disease diagnosis and disease investigation, post-mortem techniques, sample collection, sampling strategies, interpretation of laboratory assays, biosecurity, epidemiology and the importance of latent infections in disease diagnosis and disease control. Although based on VNN, the program was designed such that much of the information pertaining to VNN could be applied to the diagnosis and control of other fish diseases. A range of case studies during the workshop was used to illustrate these principles. Six University staff were co-opted as trainers, with the participant / trainer ratio providing the maximum possible advantage and benefits to the participants.
TECHNOLOGY TRANSFER (Objective 3):
Following the workshop, and pending the availability of real-time PCR capabilities in each collaborating institution, conventional PCR technology methods developed at the University of Sydney were provided to workshop participants together with assay reagents. These assays were to be established and used by the workshop participants on their return to their respective laboratories for evaluation under Indonesian conditions in comparison with PCR assays used by their laboratory at that time.
In May 2010, an evaluation of the technology transfer was conducted at each participating laboratory. Results of comparisons of the University of Sydney PCR assay with assays currently being used within each participating laboratory varied between laboratories:
At the Research Centre for Aquaculture (RCA), Jakarta, results suggested that the University of Sydney assay was not as sensitive as the RCA assay method, possibly due to the use of the short primer derived from sea-bass VNN virus and possibly associated with the extraction of RNA from fixed tissue instead of fresh tissue. Distinct advantages were however noted, and included shorter assay time, less potential for contamination and fewer false positives and false negatives.
The Batam Mariculture Centre (BMDC) reported little apparent benefit compared with the commercial kit assay in terms of ability to detect VNN virus, however, advantages in shorter assay time, greater sensitivity and ease of interpretation were reported. BMDC concluded they would adopt the University of Sydney assay as the standard PCR assay pending the development and implementation of a real-time PCR assay.
The results obtained by Gadjah Mada University suggested that the University of Sydney method was comparable if not better in sensitivity when compared to the commercial kit assay. It was concluded that Gadjah Mada University would continue to use and evaluate the University of Sydney assay in comparison with other assays, specifically the commercial kit assay and the in-house Gadjah Mada University assay, and would adopt or modify the test as appropriate to optimise its sensitivity and use.
The Research Institute for Mariculture (RIM) Gondol, failed to obtain any positive results. This was attributed to equipment failure and denaturation of reagents. Thus, meaningful comparison between the University assay and the commercial kit assay was not possible. Despite the difficulties encountered, RIM Gondol would consider adopting the University of Sydney assay because of its ease of implementation and the lack of spurious and confusing bands reportedly obtained with the commercial kit assay possibly representing false positive results.
Positive and negative control reagents were supplied to each participating laboratory in October 2010 for an initial inter-laboratory quality assurance program to independently assess the sensitivity of the assays developed by the laboratories. No results have been received at the time of reporting.
CONCLUSIONS AND RECOMMENDATIONS:
VNN remains a major disease which is largely uncontrolled in Indonesia. PCR assays, although widely adopted for disease diagnosis and health certification in Indonesia, have been largely based on the use of commercial kits, with little information on the sensitivity or specificity of the assays used and no quality control or proficiency testing between laboratories. Further, PCR assays are frequently used as a primary diagnostic tool, often without recourse to other diagnostic modalities, with potential for false positive and false negative results. The ability to diagnose disease through a defined and systematic diagnostic process is frequently absent.
The SRA, through a program of intensive training of select Indonesian scientists, provided a scientific and technical basis for the establishment and evaluation of a contemporary University of Sydney PCR assay method for VNN in Indonesian laboratories. This assay has potential to be adopted as the basis for identifying and controlling VNN under field conditions, pending the availability of real-time PCR assay capabilities within fish health laboratories.
Limited assays comparing the University of Sydney PCR assay method with methods previously used within participating laboratories indicated that three laboratories (Jakarta, Batam, Gondol) would consider adopting the University of Sydney assay subject to supply of reagents and resolution of technical issues relating to RNA extraction of fixed tissues and suitability of primers for Grouper strains of VNN. Gadjah Mada University indicated that the University of Sydney assay would continue to be evaluated in comparison with other in-house assays.
In the absence of on-going support from the University of Sydney for the continued application and evaluation of the PCR assay in Indonesian laboratories, it appears likely that laboratories will continue to use the commercial assay, with its attendant problems of cost, quality control and sensitivity.
It is recommended that a review is undertaken to evaluate the success or otherwise of the project, taking into consideration
(a) the effectiveness of the training effort undertaken with each collaborating Indonesian scientist,
(b) changes to Indonesian laboratory practices directly or indirectly resulting from the SRA and input from participating scientists, and
(c) the laboratory application of contemporary PCR assay technology supporting on-farm biosecurity and health management.
Finish Date
31/08/2010
Commissioned Organisation:
University of Sydney, Australia
Project Coordinator Email
smith@aciar.gov.au
Commissioned Organisation
University of Sydney, Faculty of Veterinary Science, Australia
Overview Collaborators
- Directorate General Aquaculture, Indonesia
ACIAR Research Program Manager
Dr Chris Barlow
Program Areas
Overview Objectives
A number of microbial and parasitic diseases affecting tropical aquaculture are common to Indonesia and Australia. Pre-eminent among these is the nodaviral disease viral nervous necrosis (VNN), which affects diverse marine finfish species and is considered a major limiting factor to economically viable and sustainable mariculture. To date little is known of how the virus spreads from the environment to hatcheries and farms (epidemiology) and the mechanisms resulting in infection and disease (pathogenesis). The University of Sydney is currently developing and evaluating a polymerase chain reaction (PCR) assay of high sensitivity and specificity for the detection of VNN and this, together with other serological methods under development, will give researchers valuable tools to better understand the epidemiology and pathogenesis of VNN.
This project is helping to develop practical on-site strategies for the control of VNN in selected Indonesian marine finfish hatcheries. The scientists are evaluating current biosecurity measures in select Indonesian marine finfish hatcheries, also assessing current diagnostic capacity in select Indonesian laboratories. They are determining functional and operational improvements needed in hatchery management and control of VNN. The project team will also enhance the knowledge base of Indonesian laboratory staff in aquatic animal pathology, epidemiology and molecular diagnostics and establish contemporary PCR technology for the diagnosis of VNN within select Indonesian laboratories. This short-term project on VNN offers considerable potential as a model on which research into the epidemiology and pathogenesis of other significant diseases may be undertaken, providing a basis on which disease control strategies may be integrated into overall aquaculture management programs in Indonesia and Australia.
Project Budget
$150,000.00
Grant Report Value
$165000.00
Grant Report Recipient
University of Sydney
Grant Report Recipient Post Code
2570
Grant Report Finish Date
31/08/2010
Grant Report Start Date
12/02/2009
Managing cocoa pod borer in Papua New Guinea through improved risk incursion management capabilities, IPM strategies and stakeholder participatory training
Project Leader
Dr Wai Hong Loke
loke@cabi.org
Fax
60 3 89426490
Phone
60 3 89432921
Project Country
Project Coordinator Phone
(02) 6217 0508
Project ID:
PC/2006/114
Start Date
01/01/2008
Project Coordinator Fax
(02) 6217 0501
Reference Number
TL-201018-32982
Project Type
Multilateral
Project Status
Active
Finish Date
30/06/2011
Commissioned Organisation:
CAB International, Malaysia
Project Coordinator Email
lim@aciar.gov.au
Commissioned Organisation
CAB International, Southeast Asia Regional Centre, Malaysia
Overview Collaborators
- University of Sydney, Australia
- National Agriculture Quarantine and Inspection Authority, Papua New Guinea
- Cocoa and Coconut Institute of PNG, Papua New Guinea
ACIAR Research Program Manager
Dr Richard Markham
Progress Reports (Year 1, 2, 3 etc)
Year 1:
The cocoa pod borer (CPB), Conopomorpha cramerella, a most serious pest of the crop, was first detected in East New Britain Province (ENBP) of Papua New Guinea (PNG) in March 2006 and was not eradicated despite intense efforts. CPB is now infesting 18 cocoa growing regions of ENBP as well as plantings at West Sepik and Madang. This project, commissioned in January 2008, is aimed at assisting cocoa stakeholders to effectively implement systematic and long term CPB management through enhancing knowledge and awareness, strengthening surveillance and monitoring efforts, develop pragmatic resource-matched and location-specific integrated pest management (IPM) programmes and development of farmer participatory training and research (FPTR) using discovery learning curricula.
The project commenced with an inception workshop held in PNG Cocoa, Coconut Institute Ltd. (PNG-CCI) over 23-24 April, 2008, with the main objectives of updating participants on the status/management of CPB in PNG and to agree on work plans and timelines for the deliverables of the various project activities. Forty-three people participated; 18 being project personnel, and the others invited to contribute to the proceedings. Visits to new CPB hotspots showed the pest to be increasingly serious in smallholder fields. Discussions with stakeholder agencies indicated keen interest to support and collaborate in the project; for example, AgMark, a local cocoa producer/buyer/supplier, has agreed to participate by hosting a replicate of the target pod spraying (TPS) trial at Tokiala Plantation and supplying the needed insecticide.
Following the inception workshop, a visit was made from 28 August to 4 September 2008 to follow up on activities of the project as agreed during the inception workshop with special emphasis on field experiments and activities, to collect more video and still materials for CPB publicity materials and DVD, to make preparations for the upcoming Training-of-Master Facilitators (TOMF) course and to resolve some administrative matters. About 70% of scheduled activities were initiated at the time of the visit. A problem with over-expenditure for the project inception workshop was also resolved by the PNG-CCI absorbing the additional cost as the institute's further contribution to the project. Members also agreed to be mindful of staying within the budget in all future aspects of the project.
Another visit was made to conduct the TOMF course at PNG-CCI, Tavilo on 14-21 November 2008. The course had 21 participants from PNG-CCI, Department of Primary Industries (DPI) and the private sector. The course curriculum was comprehensive, covering wide ranging aspects from background information on CPB to FPTR through farmer field school (FFS), field practice of agro-ecosystem analysis (AESA), and logistical aspects of management and organization of Training-of-Facilitators (TOF) and FFS. As an important output, a TOMF course Manual was produced. Participants' and course evaluations showed the TOMF course to be suitable and to have successfully attained its aim of training a core of Master Facilitators to later train Facilitators and farmers on the IPM of CPB. Opportunity was also taken during and in the remaining time after the course to follow up on the other on-going activities of the project.
Soon after the TOMF course, the first TOF course was conducted on 14-24 January 2009 at the residence of one of the MF (Mr. Koniel Batil) in Napapar 1 Village, Central Gazelle Local Level Government (LLG), Gazelle District. Twenty-eight participants came from seven wards in Zone 2 of Central Gazelle LLG, ENBP, comprising a wide range of interested individuals (e.g. farmers, councillors, former banker, DPI staff, health worker and teachers). The course curriculum covered 4 lecture presentation sessions on general aspects of CPB, FPTR, facilitation, etc. The remaining sessions were practicals in both classroom and the field. Many of the farmer participants immediately implemented what they had learnt in their cocoa fields. The second TOF course was planned for 14-22 May, 2009. Unfortunately, this had to be cancelled suddenly (on 7 May) due to an administrative 'crisis' at PNG-CCI.
Notwithstanding the last problem, all activities of the project have commenced at the time of this report.
Year 2:
This 2nd Annual Report covers progress made during 1 June 2009 to 31 May 2010. Excluded is the progress made from project inception until 31 May 2009 which has been documented in the 1st Annual Report and which covered primarily the project background, inception workshop (held over 23-24 April, 2008), TOMF course (undertaken on 14-21 November 2008), the 1st TOF course (conducted from 14-24 January 2009), progress of research activities and the various follow-on activities after each of these events.
During the period under review, progress made were: completion of the 2nd and 3rd TOF courses, initiation of 3 FFS, conduct of the Mid-Term Review Meeting and the respective follow-up activities..
The 2nd TOF course was originally planned for 14-22 May, 2009. Unfortunately, this had to be cancelled suddenly on 7 May due to an administrative "crisis" at PNGCCIL. This was rescheduled and conducted on 20-28 August 2009 by six lead MF with assistance from several supporting MF. The course had 27 participants comprising farmers, extension workers, training staff from the private sector, staff members of DPI, ward councillors, and members of various groups/committees. Like the 1st TOF, the course curriculum was comprehensive and generally followed that of the November 2008 TOMF course but modified/abridged to suit the requirements of the TOF. Details of the course syllabus were subsequently compiled into a TOF Manual.
The 3rd TOF was conducted in addition to the two TOFs originally targeted by the project, primarily due to initiative and strong motivation of MFs. This TOF trained an additional batch of 16 local farmer Facilitators. This 3rd TOF course was conducted at PNGCCIL by five MFs; with both Dr. Samson Laup and Paul Gende giving overall support throughout the course. Details of course syllabus were similar to the training manual used in the 2nd TOF course.
In general, an important selection criterion of participants for both the TOFs was that the participants are in a position to conduct FFS on return to their farms and work places. Participants' and course evaluations showed the two TOF courses to be suitable both in substance and form and to have successfully attained their aim of training Facilitators to conduct FFS on the IPM of CPB.
Both MF and Facilitators after their training have started to organize and conduct FFS in early 2010. A total of three FFS (out of four FFS to be undertaken by the project) are now being conducted in three different locations and in varying stages of progress. Of the three on-going FFS, the one in Napapar, with 30 farmers, is in the most advanced stage with FFS training sessions in active progress. This FFS is expected to complete in May 2010. The 2nd FFS, with 33 farmers is in Kabaira. Farmer awareness and selection have been completed, including the baseline survey and a few initial FFS sessions. The 3rd FFS, with 32 farmers is in Kareeba. Farmer awareness and selection have been completed, with the baseline survey undertaken on 9 March 2010. A few initial FFS sessions have also been conducted.
The project Mid-Term Review Meeting was held at PNGCCIL at Tavilo on 17-18 March 2010. It was attended by 22 persons from project partner organizations and their associates. A total of 11 presentations were made covering status of infestation and management of CPB in PNG, progress of project activities, training and information dissemination, information resources, and partner insights. A visit was also made to the project FFS at Napapar. The meeting ended with a closed-door session for project partners.
During the meeting, participants were updated on various aspects and progress of the project, including identifying future work. These included:
1. CPB is continuing its spread in PNG, having found its way into cocoa of East Sepik, New Ireland, West New Britain and Bougainville. Management is clearly the only option in meeting the challenge of the pest, with awareness, training, establishment of demonstration blocks and research for constant improvement of said components being the main strategy.
2. On research, appropriate sampling intensities during delimiting surveys or post treatment census are essential for accurate reflection of CPB infestation as well as effectiveness of control inputs. There are indications from research of this project that current surveillance counts are under-sampling the CPB population, resulting in inability to detect low levels of infestation. Outputs of this project are expected to address this weakness. Sandwich trapping at cocoa canopy level has been shown to be a good alternative to current delta trapping, particularly when maximization of catches is important. This is another finding of the project that would improve monitoring of the pest. The use of improved planting material and development of biocontrol initiatives are important elements for strengthening integrated CPB management and should be priorities for future research.
3. Training modules and curriculum currently developed are appropriate and where they are successfully implemented, have provided encouraging results. The challenge is to ensure sustainability and expansion of training. Funding is always a constraint but the adoption of PAR and FFS approaches is expected to increase realization of these aims wherever training is carried out. The active participation of the private sector, e.g., AgMark's initiatives, will further contribute to these aims. Notwithstanding, the training curriculum must evolve to include additional aspects that would strengthen CPB control. Proper selection and training of trainers is also important in order to ensure their credibility and availability. Training must also always consider local culture and conditions in order to maximize acceptance by farmers.
4. Two posters on CPB biology and management and a multimedia DVD were presented during the meeting. These were well-received by participants. Corrections and amendments arising will however need to be incorporated.
5. Except for activities on evaluation of target pod spraying and demonstration plots, the project is generally on track. Dr. Ho spent considerable time in the week after the meeting to put the outstanding activities back on track. On training, the possibility of expanding FFS to a total of seven over the originally planned four sites will be explored.
6. Discussions between partners during and after the meeting led to consensus that 3 years was a short time for a project of the present scope and severity of the CPB problem. Even with the achievement of all the objectives of the project, outcomes can only at best be foundations for more extensive programmes for management of the pest. The priority will now be to finish the planned activities by end of the project in mid-2011 and propose a second phase to address additional work identified during the visit to further strengthen CPB management in PNG. A concept note on this has been submitted to ACIAR for their consideration.
Program Areas
Overview Objectives
Smallholder livelihoods derived from cocoa in PNG are threatened by the incursion of the cocoa pod borer Conopomorpha cramerella into the country. The pest was first detected in the Kerevat area of East New Britain Province in March 2006 and later confirmed in Aitape of West Sepik Province in June. Eradication operations, implemented in East New Britain after the first detection, were not fully implemented at West Sepik, and cocoa pod borer re-emerged in the Vudal, Tais and Tokiala smallholder blocks in the Gazelle Peninsula in March 2007.
The project will assist PNG to effectively implement systematic and long-term pod borer management through enhancing stakeholder knowledge and awareness, strengthening surveillance and monitoring efforts, development of pragmatic resource-matched and location-specific integrated pest management programs, and development of farmer participatory training and research.
Project Budget
$704,300.00
Grant Report Value
$0.00
Grant Report Recipient
CAB International
Grant Report Recipient Post Code
43400
Grant Report Finish Date
30/06/2011
Grant Report Start Date
20/11/2007
Integrated control of powdery mildew and other disease, weed and insect problems in squash in Tonga and Australia
Project Leader
Associate Professor Robyn McConchie
r.mcconchie@usyd.edu.au
Fax
0293518562 or 02 9351 4172
Phone
0293518536 or
Project Coordinator Phone
(02) 6217 0553
Project ID:
PC/2003/046
Start Date
01/01/2005
Project Coordinator Fax
(02) 6217 0501
Reference Number
BR-202410-37484
Project Type
Bilateral
Project Status
Concluded
Finish Date
30/06/2008
Extension Start Date
01/04/2010
Commissioned Organisation:
University of Sydney, Australia
Project Coordinator Email
baxter@aciar.gov.au
Commissioned Organisation
University of Sydney, Faculty of Agriculture Food and Natural Resources, Australia
Extension Finish Date
31/12/2010
Overview Collaborators
- Ministry of Agriculture, Forestry and Food, Tonga
- Secretariat of the Pacific Community, Fiji
ACIAR Research Program Manager
Dr Richard Markham
Progress Reports (Year 1, 2, 3 etc)
Year 1:
Tonga
A field investigation into control of powdery mildew using fungicides, generally regarded as safe (GRAS) chemicals and inducers of natural resistance was conducted this season from July to October 2005. Powdery mildew severity was relatively mild this season. The most effective fungicide in this trial was Talius (both high and low rates) followed by Punch+Afugan, Sulphur, JMS stylet oil, Actigard and the Control (untreated). Exportable yield in t/ha was highest in Talius treatments with 17.21 (low rate), 15.30(high rate), 13.29 (Punch+Afugan, 12.71 (Rubigan), 12.20 (Sulphur), 11.29 (Actigard), 11.01 (JMS stylet oil) and 10.96 (Control). Sugar content was highest in the Punch+Afugan replicates with 9.81%, Actigard (9.64%), Rubigan (9.40%), JMS stylet oil (9.39%), Talius[high (9.15%)], Sulphur (9.08%), Control (8.70%) and the lowest sugar content was recorded in Talius [low(8.61%)].
Australia
An objective powdery mildew screening procedure was developed using a scanning program to assess % severity. Six cultivars of squash : Kabocha SPS8682, Kabocha SPS3742, Kabocha Amali Delica 2643R3KQJ, Kabocha SPS7764, Kabocha SPS8702, Hybrid Japanese Kurijiman F1were screened for resistance to powdery mildew. All were susceptible with no evidence of partial resistance. In glasshouse trials, whole leaf and detached leaf screening of GRAS and defence elicitors was conducted for control of powdery mildew prior to conducting a field trial. Milsana, Thiovit, Silica, an organic oil product GC3, an oil product Biocover, Actigard, and Ti Tree oil, were used and the best treatments selected for use in a field trial in late 2005. In separate trials optimum concentrations of Milsana and silica for PM control was determined. Milsana and Thiovit were significantly better at controlling powdery mildew in the preliminary trials. For the field trial, an integrated approach was developed in testing efficacy of both Milsana and Thiovit against conventional fungicide treatments. Treatments were: Milsana, Thiovit, Amistar, alternate Milsana + Thiovit, alternate Thiovit + Amistar, alternate Milsana + Thiovit + Amistar, Water and Surfactant, and Commercial Practice. The trial was completed in March 2006 and is currently being analysed.
Year 2:
Aim
To improve field-based crop protection and market quality of squash within a systems framework addressing a) Powdery Mildew, b) silver leaf whitefly, c) virus management, d) weed management and e) grower uptake and market implications.
Objectives
1. Development of integrated field management strategies for control of Powdery Mildew and other fungal diseases.
2. Investigation of sustainable cultural, biological and chemical control strategies to Silver leaf Whitefly infestations
3. Identification and control of the major virus diseases of Kabocha squash
4. Development of effective approaches to suppressing weeds that compete with and limit crop production and profitability for farmers in cropping.
5. Optimization of technological adoption and extension through use of on-farm trials and stakeholder workshops and increase awareness of market implications
Due to the retirement of Dr Pita Taufatofua, Dr Villami Manu, Head of Vaini Research Station, has taken over as Team Leader of the Tongan MAFF research team. In contrast to 2005 when a government strike interrupted trials, the team members have made significant progress in meeting the project objectives in 2006.
Both 2005 and 2006 trials in Tonga and Australia have shown that replacement of fungicides with Generally Regarded as Safe (GRAS) chemicals is just as effective in controlling Powdery Mildew as using traditional fungicides alone. The results indicate that environmentally friendly chemicals can be used in controlling powdery mildew without compromising control. Preliminary testing for fungicide resistance by Powdery Mildew suggests there is no resistance to the current suite of fungicides used in Tonga, but this needs to be verified by further testing with isolates from a greater geographical range.
Weed species and other cucurbit crops were screened as potential alternative hosts for viruses. ELISA tests found that Sonchus oleraceus and Chamaesyce sp. were alternative hosts for ZYMV and WMV. The results indicate that weed control around squash plantations is an important aspect of virus control. Further screening for alternative hosts will be conducted in 2007, as will testing for virus transmission via seed.
A survey of weed species and % cover during succession after ploughing was conducted. An early weed coloniser was Commelina sp. however within 3 weeks Macuna seeds had germinated and become the dominant leafy cover. Trials using Macuna pruriens as a cover crop during the fallow season were also begun in 2006. In July 2007, squash will be either planted through the herbicided Macuna or planted after the Macuna cover crop is ploughed in. Apart from the benefits of weed control, Macuna is expected to increase nitrogen levels in the soil, reducing the input of inorganic fertilizer.
Colonies of the introduced Silver Leaf Whitefly parasitoid Erotmocerus hayati died during early 2006. The parasitoid will be re-introduced from Brisbane in early 2007. Evaluation of safer insecticides that are compatible with IPM, was conducted in 2006. All were effective against SLWF, however data are yet to be analysed.
Ms Sela Tupouniau, the MAFF Plant Pathologist took up a JAF fellowship in January 2007 to study for her PhD. at the University of Sydney.
Year 3:
Under the leadership of Dr Viliami Manu, Head of Vaini Research Station, the Tongan MAFF research team made significant progress in meeting objectives in 2007. The 2007 field trial for controlling powdery mildew on squash using fungicides suggests there is no resistance to currently available fungicides in Tonga. Rotational use of the fungicides is important to prevent resistance development in powdery mildew strains.
The GRAS chemicals tested in Tonga and Australia show consistent effectiveness for the control of powdery mildew of squash. A recommendation will be made on the cost to the Tongan and Australian markets on incorporating GRAS chemicals into the spray schedule, reducing the reliance on fungicides.
A study on the powdery mildew populations in squash in Tonga is underway by Ms Tupouniua as part of her PhD study program. Samples of squash powdery mildew are being tested for their sensitivity against different fungicides along with a microscopic study for taxonomic identification.
Field evaluation of insecticides to control Silverleaf Whitefly was not conclusive because of very low infestation in squash during the experimental season (August 2007). An experiment on biological control of Silverleaf Whitefly in tomato is underway in controlled conditions with the introduced parasite of Eretmocerus hayati from Brisbane CSIRO. Methods for screening alternative hosts of viruses affecting squash production were demonstrated to MAFF personnel and the tests are being conducted.
The experiments for the effectiveness of the cover crop of Macuna pruriens that began in 2006 and again in 2007 has been shown to be beneficial in controlling weed population as well increasing economic returns from squash cultivation.
A survey was conducted in 2007 in squash growing areas for prevalence of insect pest and diseases and weed infestation. Good rainfall and a cool climate in 2007 resulted in increased production of squash, through increased fruit set, despite significant powdery mildew infestation during the season. The same climatic conditions reduced the population of Silverleaf Whitefly, and as a result, lowered the level of infection by virus.
Year 4:
In April 2008 a review of the project PC(then HORT)/2003/046, Integrated control of Powdery mildew and other disease, weed and insect problems in squash in Tonga and Australia, was undertaken and a report submitted to ACIAR. The review indicated that the project has performed well against most objectives, activities, milestones and outputs and the project team is to be congratulated on the work to date. Despite some minor setbacks and issues, significant progress had been made towards the aims and objectives.
For Powdery mildew, it was demonstrated, in Australia and Tonga, that generally regarded as safe (GRAS) chemicals such as Stylet Oil and Milsana could be effectively incorporated into commercial spray programs, thereby reducing the number of less-environmentally friendly fungicides applied. On this basis, recommended spray regimes have been developed. In addition, fungicide resistance to commonly used commercial powdery mildew fungicides has been detected in powdery mildew isolates from Tonga.
For Silverleaf whitefly (SLW), the parasitoid, Eretmocerus hayati, has been introduced from the Commonwealth Scientific and Industrial Research Organisation (CSIRO) in Australia and released in Tonga. Two SLW insecticides that are compatible with integrated pest management (IPM) approaches, Chess and Applaud, have been identified for inclusion in an IPM strategy.
Two major potyviruses associated with virus diseases in squash in Tonga have been identified, along with a range of weed hosts and vectors.
To improve weed management, Mucuna has been demonstrated as a weed control technique, for use both pre-planting and as an inter-row cover crop.
In the area of technology transfer and extension, field days, workshops and IPM training workshops were held for growers and technical staff. Field surveys of powdery mildew and SLW distribution in commercial crops were completed.
Additional activities were undertaken, including studies on: cultivar resistance to powdery mildew, chemical resistance to powdery mildew strains, virus on seed transmissibility and planting directly into mulches.
Capacity building activities have included visits of staff of the Tongan Ministry of Agriculture and Food, Forests and Fisheries (MAFFF) to Australia for training, in-country workshops, transfer of technical and scientific skills (e.g. trial design and analysis, ELISA) and formal training through the John Allwright Fellowship Scheme.
While the project has achieved many of the intended milestones and outcomes, there are three major deficiencies that have the potential to severely restrict the project's impact: commercial recommendations have not been formally developed, nor have the elements, plus agronomy, been included in an integrated crop management package; demonstration and dissemination of these recommendations has not occurred; and robust economic analysis of these recommendation has not been carried out - i.e. demonstration that these recommendations are not only effective but also cost-effective.
The review team recommended an extension phase of the project to address the areas not yet completed. An Extension Application was submitted October 2008 and approved.
Year 5:
In December 2008 an extension was approved to June 2010 to complete the remaining tasks of the original project. In summary the extension was to allow time and funding to finalise the best options for control of powdery mildew, silverleaf whitefly (SLWF), viruses and weed management, based on the significant number of trials undertaken during the project period. The best options were to be communicated to extension officers and growers through an extension workshop and a grower's manual. Due to staffing changes these objectives were not fully achieved and, following end-of-project review in April 2010, the project has been extended to December 2010 to allow a final season for communicating the outcomes to the industry stakeholders. The project has now achieved many of the intended milestones and outcomes, and in the final 9-month extension, commercial recommendations will be disseminated as updated extension leaflets, with a farm demonstration field day in September 2010, and will include economic analysis of these recommendation to ensure they are not only effective but also cost-effective.
a. Powdery Mildew
Based on three years of trials, the results have demonstrated that it is a) important to alternate class of fungicide during the season to avoid resistance buildup of powdery mildew populations, b) it is possible to replace one or two hard fungicide (e.g. triazole) applications with GRAS options such as stylet oil or sulphur, c) systemic acquired resistance (SAR) may be useful as a seed treatment before sowing to obtain resistance throughout the plant. An extension workshop was held with farmers in February 2010 on safe use of pesticides and leaflets handed out on powdery mildew control in squash.
b. Weeds Project
Use of Mucuna during the fallow season has been very successful in suppressing weeds in the following squash season. An extension workshop was held with farmers in Feb 2010 on use of Mucuna to reduce weed problems. Extension material consisted of audio visual material as well as posters and leaflets. In the west of the island Mucuna has been adopted by one large squash grower which has had positive influence on others taking up the new intervention. The advantages of using Mucuna are: a) farmers are able to commence land preparation a later in May, b) it is easier to cultivate land compared to the vigorous grass weeds, c) there are less weeds in the squash crop, d) Mucuna adds nitrogen and organic matter to the soil, e) there is some evidence that Mucuna assists in the release of phosphorous, bound in the soil.
c. SLWF
SLWF has not been a great problem during the life of the project and therefore conclusions on the use of pesticides that complement IPM practices have not been confirmed. SLWF affects tomato crops in April-August and then moves across to squash. There were two releases of the parasitoid Eretmocerus hayatii; however heavy rain prevented the buildup of natural populations. This season, scouting will confirm whether the parasitoid is present or whether re-introduction is necessary.
d. Virology
It was confirmed that the following weeds tested as hosts for the following viruses: a) Synedrella nodiflora - positive for ZYMV & PRSV, b) Commelina benghalensis - positive for CMV, c) Commelina grandis - positive for PRSV, d) Malvastrium coromandelianum - positive for ZYMV and PRSV. The main vector identified was Aphis gossipii. No evidence of seed transmission was found. Recommended control of viruses in squash involves use of field hygiene such removal of field debris plus control of insect vectors.
Capacity building activities have included training through the John Allwright Fellowship Scheme.
Project Background and Objectives
Agriculture is a vital contributor to the economy of Tonga. It is the leading employer, foreign exchange earner and is essential to food security. The leading agricultural export is squash, earning $10.8 million in 2002. Squash is quick and easy to grow with a clear market in exports to Japan. In recent times other export industries in the agriculture sector have suffered due to pest and disease problems, making squash even more vital. These disease and pest problems are now beginning to reach threatening levels in the squash sector too. Controls against pests and diseases have been less effective. In turn this has increased pesticide usage resulting in pesticide resistance emerging. The use of pesticides also has implications for Tonga's water supply which is particularly vulnerable to water borne pollutants. The prevalence of diseases and pests has reduced the industry by close to two-thirds, from 2000 active farmers in 1987 to an estimated 550 in 2003.
Powdery mildew is the main disease. Outbreaks defoliate crops, in turn making plants more vulnerable to silver leaf white fly, other viruses and weeds. Current fungicides against powdery mildew are unreliable with increasing resistance reported. Past ACIAR research has demonstrated the value of integrated approaches to controlling powdery mildew which are applicable to Tongan conditions. These, along with pest controls targeting white fly and disease controls against viruses found in squash, have the potential to significantly rehabilitate the industry. The sustainability of the Tongan squash industry is being addressed through improvements to integrated disease, pest and weed management, specifically to improve field-based crop protection and market quality of squash within a systems framework.
Program Areas
Overview Methodologies
Powdery Mildew
develop integrated field management strategies for control of powdery mildew and other fungal diseases.
evaluation of SAR Activators as well as GRAS (generally regarded as safe) chemicals to reduce the heavy reliance on current fungicides
Silverleaf Whitefly Management
investigate sustainable cultural, biological and chemical control strategies to whitefly infestations.
identify an improved program of insecticide use for SLW control
gather information on alternative hosts
identify a more effective range of insecticides that are compatible with IPM practices establishment of biological predators of SLW in Tonga in conjunction with hygienic cultural practices will reduce SLW population below critical levels
Virus Management
identification and control of the major virus diseases of Kabocha squash
gather information on virus species, and knowledge of alternative weed hosts and the presence of strain variation within species
targeted pre and post planting sanitation activities to reduce numbers of primary inoculum sources in squash crops
Weeds
develop effective approaches to suppressing weeds that compete with and limit crop production and profitability for farmers in cropping
develop feasible integrated weed management including practices to reduce the current high labour costs of week control
Technological Adoption
on-farm trials and stakeholder workshops to increase awareness of market implications
capacity building in information and skills to provide scientists, advisors and farmers with greater autonomy and power in the production decision-making process
Overview Objectives
Foster the sustainability of the Tonga squash industry through improvements to integrated disease, pest and weed management, specifically to improve field-based crop protection and market quality of squash within a systems framework addressing:
powdery mildew,
silverleaf whitefly,
virus management,
weed management, and
grower uptake and market implications.
Project Budget
$555,469.00
Grant Report Value
$611016.00
Grant Report Recipient
University of Sydney
Grant Report Recipient Post Code
2006
Grant Report Finish Date
31/12/2010
Grant Report Start Date
01/11/2004
Linking India and Australia to a global strategy for the Ug99 stem rust pathotype
Project Leader
Dr Evans Lagudah
evans.lagudah@csiro.au
Fax
02 6246 5000
Phone
02 6246 5392
Project Country
Project Outcomes
The project successfully delivered a new and robust molecular marker capable of identifying the smallest chromosomal introgressed segment containing the stem rust resistance gene, Sr22. This gene currently provides resistance to all stem rust isolates in Australia, India and against Ug99 and its derivatives. Furthermore tests conducted in Ethiopia, by CIMMYT scientists, where other virulent stem rust races adapted to durum wheats occur, showed that Sr22 was effective against the specialised Ethiopian races.
The use of the robust Sr22 molecular marker as breeding tool will be deployed in India through the ACIAR-funded project CIM/2005/020, 'Molecular marker technologies for faster wheat breeding' and in Australia through the Australian Cereal Rust Control Program's relationships with breeding companies.
The research team recommended that researchers in project CIM/2005/020 make every effort in the use of the Sr22 breeding tool to combine with other effective resistance genes in their germplasm development rather than Sr22 alone. As well, wheat breeders must consider whether to restrict the use of Sr22 to bread wheats and avoid durum wheats, in order to extend the lifespan of Sr22 resistance.
In addition the SRA project was able to show that adult-plant stem rust resistance genes were present in the targeted Australian varieties, such as Hartog, as well as the North American variety Thatcher (known for its specific interaction with a broad-spectrum adult plant resistance gene, Lr34/Yr18). In order to progress with marker development for the Thatcher-based adult plant resistance genes, a new set of genetic populations will be required due to the confounding rust-resistance phenotypes observed with the Australian cultivars Meering and Oxley.
This Small Research Activity (SRA) enabled interaction with Indian Council of Agricultural Research partners and field-rust evaluations at different sites in India. The team concluded that the location at the Indian Agricultural Research Institute regional station, Wellington, provided one of the consistent sites for achieving rust epidemics for experimental studies. Visits to Australia by Drs Vinod Prabhu (IARI, Delhi) and Mohinder Prashar (DWR, Shimla) aided the development of the new project CIM/2007/084 to follow up on the findings of the SRA. The project aims to develop molecular markers to broaden the genetic base for stem rust resistance genes effective against Ug99.
Project ID:
CIM/2007/064
Start Date
01/04/2008
Reference Number
RH-200409-88984
Project Type
Other
Project Status
Concluded
Final Progress Report
The stem rust pathotype, Ug99 or TTKS, first identified in Uganda in 1998 and confirmed in 1999 is virulent on many commercial cultivars of wheat and is capable of overcoming a number of important stem rust resistance genes. Fifty million hectares, or potentially 25% of the world's wheat crop, is thought to be at risk with over 90% of wheat cultivars in the likely spore migration route susceptible to 'Ug99'. Additional variants derived from 'Ug99' and designated as TTKST and TTSSK, have been shown to exhibit virulence to genes Sr24 and Sr36 respectively and points to the continued evolution of Ug99. In response to this bio-security threat to global food production, the implementation of this SRA project CIM-2007-064, brought together Indian researchers and partners from CSIRO and the University of Sydney to augment the global response to tackling this disease. This project aims to: (1) develop DNA markers for pyramiding seedling resistance genes effective against Ug99; (2) develop genetic stocks for future marker development for new sources of adult plant stem rust resistance; (3) facilitate the deployment of the newly developed markers in breeding programs;(4) Develop a large international ACIAR project, CIM-2007-084, to extend and intensify the activities of the current project for a further four years.
The project has been successful in delivering on a new and robust molecular marker capable of identifying the smallest chromosomal introgessed segment containing the stem rust resistance gene, Sr22. This gene currently provides resistance to all stem rust isolates in Australia, India and against Ug99 and its derivatives. Furthermore tests conducted in Ethiopia, by CIMMYT scientists, where other virulent stem rust races adapted to durum wheats occur, showed that Sr22 was effective against the specialised Ethiopian races.
The use of the robust Sr22 molecular marker as breeding tool will be deployed in India through the ACIAR funded project CIM-2005-20 'Molecular marker technologies for faster wheat breeding' and in Australia through the Australian Cereal Rust Control Program's relationships with breeding companies. We recommend that researchers in project CIM-2005-20 make every effort in the use of the Sr22 breeding tool to combine with other effective resistance genes in their germplasm development rather than Sr22 alone.
Consideration needs to be given by wheat breeders whether to restrict the use of Sr22 to bread wheats and not durum wheats in order to extend the lifespan of Sr22 resistance.
In addition to all plant growth stage disease resistance genes, such as Sr22, the SRA project was able to show that adult-plant stem rust resistance genes were present in the targeted Australian varieties, such as Hartog as well as the North American variety Thatcher known for its specific interaction with a broad spectrum adult plant resistance gene, Lr34/Yr18. In order to progress with marker development for the Thatcher based adult plant resistance genes, a new set of genetic populations will be required due to the confounding rust resistance phenotypes observed with the Australian cultivars Meering and Oxley that was first proposed in the SRA.
The SRA enabled interaction with Indian Council of Agricultural Research partners and field rust evaluations at different sites in India. We concluded the location at the Indian Agricultural Research Institute regional station, Wellington, provided one of the consistent sites for achieving rust epidemics for experimental studies. Following on from the visits to Australia by Drs Vinod Prabhu (IARI, Delhi) and Mohinder Prashar (DWR, Shimla), a new project, CIM-2007-084, was developed to follow-up on the SRA which aims to broaden the genetic base for stem rust resistance genes effective against Ug99 through molecular markers.
Finish Date
31/03/2009
Extension Start Date
01/04/2009
Commissioned Organisation:
CSIRO Plant Industry, Australia
Commissioned Organisation
CSIRO Plant Industry, Australia
Extension Finish Date
30/06/2009
Overview Collaborators
- Indian Agricultural Research Institute, India
- University of Sydney, Australia
- University of Agricultural Sciences, India
- Directorate of Wheat Research, India
ACIAR Research Program Manager
Dr Paul Fox
Program Areas
Overview Objectives
Stem rust is a fungus disease of wheat, and in 1999 a new stem rust pathotype, Ug99 or TTKS, was identified in Uganda. It is virulent on many commercial cultivars of wheat and is capable of overcoming a number of important stem rust resistance genes. Additional variants derived from 'Ug99' and designated as TTKST and TTSSK, have been shown to exhibit virulence to genes Sr24 and Sr36 respectively and points to the continued evolution of Ug99. This pathotype has spread to other East African nations and to Yemen, and there is a high likelihood that it will reach and threaten the wheat-growing regions of Asia. This small research activity augmented the global program to combat Ug99. Specific aims were to:
develop genetic stocks for future marker development for new sources of adult plant stem rust resistance
develop DNA markers for pyramiding seedling resistance genes effective against Ug99
facilitate the deployment of the newly developed markers in breeding programs
develop a large ACIAR project (CIM/2007/084) that will extend and intensify these activities for a further four years.
Project Budget
$150,000.00
Grant Report Value
$165000.00
Grant Report Recipient
CSIRO Plant Industry
Grant Report Recipient Post Code
2601
Grant Report Finish Date
30/06/2009
Grant Report Start Date
02/04/2008
